Apple has a 'local monopoly' in that it is the only choice for those who have bought into the iOS (and, to a lesser extent, OSX) family. Combine this with the fact that many schools use iPads and the situation soon becomes clear: in some segments Apple has a remarkably high presence.
Now you can say 'but anyone who buys Apple devices does so with the knowledge that these restrictions apply', and that is certainly true. The same can however be said for anyone who buys an Android device, with the added factor of being able to select alternatives for those Google apps and services.
In other words, if the EU thinks Google should be prosecuted, then so should Apple, for all the same reasons - only more so.