http://inters.org/Newton-Scholium-Principia-Mathematica
"This Being governs all things, not as the soul of the world, but as Lord over all: And on account of his dominion he is wont to be called Lord God Pantokrator,or Universal Ruler...." and, like, this stuff is all over the place in the Principia. You cannot separate Newton the theologian from Newton the mathematician from Newton the physicist.