That the narrator is omniscient doesn't change anything. The question still remains: under what circumstances would the narrator have told you, e.g., that "he has a boy born on Tuesday" vs. "he has a girl born on Tuesday". Perhaps this omniscient narrator really likes girls, in which case they would tell you about a girl if Mr. Jones had any girls. Then since they told you "Mr. Jones has a boy born on Tuesday", you know definitely that Mr. Jones has no girls.
Ignoring the source of your knowledge doesn't make that source any less important. And the standard convention you're talking about corresponds to a source of knowledge where you ask a yes/no question and get a yes, which is frequently unrealistic. This is why it disagrees with people's intuition, and this problem is called a paradox.