Of course it's talking about free choice. Introducing "discouragement" in the equation is itself begging the question : it's an extra hypothesis which is unnecessary in presence of a simpler, more fundamental explanation (like this one https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166361/ ). Occam's Razor 101.
> includes a direct claim that women in Google's workforce are less capable than men.
Citation needed.