The big concession to the South with the 3/5 compromise which primarily had an effect upon the representation in the House, and correspondingly an effect on the Electoral College.
Actually the reason there is both the House and the Senate is that the Senate was intended to represent the voice of the states in the federal government. It wasn't supposed to be only about how many votes the people of each state get. Senators were originally appointed by the state legislatures.
That was changed in a fit of populism in the early 20th century and has caused only problems ever since.
50% of the US population lives in 10 states.
Don't you think the other 40 states would like a say too? Or do you (mistakenly) believe the concerns of urban citizens are identical to those living in rural areas?
Because it takes agreement from three quarters of the states to change the constitution for good reason, and three quarters of the states aren't convinced we don't need them anymore.
Because they were exceedingly well educated, with a knowledge of the rise and fall of nations, and of the shortcomings of human nature. They designed a system of checks and balances that gives the individual the best chances at success in such a world. The reasoning behind these decisions are well documented in the Federalist Papers.
In which loopholes have been found and exploited to such a degree that these checks and balances now gives the individuals with enough moral terpitude the best chance at success at the expense of most individuals.