It's not fantastic if you're working on an Electron app where there might be one specific feature that requires a native module in order to hit an OS API that you can't do from a browser sandbox (and that Electron itself doesn't expose).
Rather than pursue total deprecation/eventual removal of postinstall/native modules, I think a package.json "allowNativeDependencies": "never" | "devOnly" | "always" option that defaults to "devOnly" if not specified is the way to go.