Can you confirm that it's not rewriting the URL to
https://yc.dev first before issuing a request to the network? It's possible that Safari has suffered some kind of regression. This definitely used to work at some point.
I can confirm here in Chrome and Firefox that the URL is rewritten internally to https://yc.dev (which then redirects to https://ycombinator.dev), so no unencrypted traffic is ever sent over the network.