No-one denies that there are differences in average intelligence between different
populations. The claim that there is variation in intelligence between populations is practically equivalent to the claim that there is variation between individuals in intelligence, since given individual variation, it must be the case that some groups of individuals will have higher means than others. This could only fail to be the case if
nothing was correlated with intelligence.
The controversial (and incorrect) claims are (a) that there is a scientific notion of 'race' and (b) that genetic differences between these 'races' are responsible for certain observed differences between certain populations.