This is a great feature I did not know about, thanks
I don't understand how it applies to the OP problem. Even without "zero installs", yarn all by itself with a yarn.lock already ensures the same versions as in the yarn.lock will be installed -- which will still be a reproducible build as long as a given version hasn't changed in the npm repo.
(It looks to me like "yarn zero" is primarily intended to let you install without a reliable network and/or faster and/or reduce the size of your deployment artifacts; but, true, it also gives you defense against a package-version being removed or maliciously changed in the npm repo true. But this wasn't something that happened in OP case was it? A particular version of a particular package being removed or changed in repo?)
In this case, it was a new version that introduced the breakage, not changed artifact for an existing version. AND the problem occurs on trying to create a new project template (if I understand right), so I thin it's unlikely you'd already have a yarn.lock or a .yarn/cache?
Am i missing something? Dont' think it's related to OP. But it's a cool feature!