Wouldn't say it's an exception; the scenes from the battle and the aftermath still look pretty planar to me. Similarly, the battle with Borg over Earth, while not completely flat, had ships orbiting the Borg cube more-less along a plane.
The Dominion Wars in DS9 had been both the best and the worst, sometimes in the same battles. I remember the confrontation when the Federation fleet tried to punch through a Dominion blockade to DS9. Yes, they were saved by the Klingons arriving off-plane (and with the local star behind them, reminiscent of a WWI/WWII fighter tactic), but other than that, the battle was terribly planar and terribly crowded.
Star Trek has IMO nailed most narrative, but I wish they'd remake combat scenes with a little better, and more 3D, choreography. Leave the FX the same, though; IMO the TNG/DS9/VOY/ENT style of weapons was the best in the whole series, and the best in "soft sci-fi".