I don't know anything about Bookdown and it may be similar to Asciidoc. I would be willing to bet that Asciidoc would be around longer than most of the MD variants though.
Why might you want to continue using MD flavors? You already have loads of MD docs and you have no control over the processes which create them (shared environment, higher-ups force you to use MD, etc.)
NOTE: If you're interested in Asciidoc, also take a look at Asciidoctor.