As I understood, this is about CONTENT ENCODING using brotli - i.e. the http response message body is encoded via brotli. Why would this be any different to any other encoding on its impact on proxies?
Of course, brotli compression for the TRANSPORT is another thing. I appreciate that there may be some (non-transparent) proxies, IDS, etc that may choke - but thats not what the author seems concerned with.
It sounds as if cloudflare have disabled brotli content encoding (but just for http?), and are using brotli compressed transport incompatibilities (if you consider not being able to snoop on TLS an incompatibility) as the reason for doing so. The two are completely different things, no?