I think it's probably reasonable when performing your incident response or even threat modeling to assume the attacker has or could escalate privileges. The linked article doesn't discuss anything that would make that harder, although perhaps practices like staying patched and minimizing attack surface are somewhat assumed (they do bring up choosing your OS based on minimizing attack surface for example).
There's also a lot you can do to harden that boundary. You can harden your kernel, you can execute user's shells in constrained environments like docker containers or restricted shells, leverage sandboxing technologies like apparmor or selinux, etc.
The user/root boundary can be a lot thinner than people expect, so I get why you'd want to point out that reliance on the attacker not escalating should be met with an evaluation of that boundary, but I think it may be understating the boundary to unconditionally not trust a host based firewall, or to say that getting onto the bastion itself is enough to disable the firewall when it does indeed require escalation.
