According to google, murder:
> the unlawful premeditated killing of one human being by another.
According to wikipedia:
> Murder is the unlawful killing of another human without justification or valid excuse, especially the unlawful killing of another human with malice aforethought.
So if the missile was fired by people that are legally allowed to kill other people, "Do not murder" has been respected.
> Do not return evil for evil.
I feel like there is a difference between preventing someone to commit evil acts (defending yourself) and attacking them.
> Honor all people
You can honor fallen enemies.
> Love your neighbor as yourself. Love your enemies.
Might be a stretch, but I don't think love would prevent you from killing someone if that was necessary.
> Do not do to another what you would not have done to yourself.
Presumably you would rather be killed than be allowed to murder other people.
All of that may be a bit of a stretch, I don't know much about religious doctrine. But it's still coherant with "common sense" I think.