Implied is the statement that the end justifies the means. But how do you weigh the proportionality of measures taken? Do you adopt a utilitarian point of view, looking at, say, deaths prevented? Is anything game, or should agencies be expected to uphold a code of conduct, bill of rights or exclude entire categories of information? How do you assess what is or isn't a threat to a country and thereby something it needs to be protected from? What is a country - the president, the party, the government, its citizenry, businesses?
Second, with the popularity of invoking "national security" as an authority argument, how can these agencies ever be accountable? Who watches the watchmen? Are we to trust agencies reporting on the number of e.g. terrorist incidents prevented, especially if the information sources are opaque and there's an obvious conflict of interest?
Third, given the existence of programs like MK Ultra and Cointelpro, is it really safe to say agencies won't try to overreach? With examples like the Stargate program ("Men Who Stare At Goats"), should we have faith they know what they're doing?