APT is part of the core Debian distro. I don't know about "audited", but it's tested, and it's maintained. And the packages in "main" are also tested.
I don't program in Python, and I don't know how Pip packages are audited. An awful lot of the packages in Debian main are Python and Ruby libraries, and I suspect that they are rarely used: I assume most Python and Ruby users rely on their own language-specific package manager.
I also regret the arrival of distro-agnostic package managers like Flatpak. But that's fine; I understand why developers use them, and I'm not going to rag on them for that decision. I'm just much less likely to install them.