I wasn't alive so I'm just going off casual web searches, but most people seem to credit this 1969 book:
https://en.wikipedia.org/wiki/The_Making_of_a_Counter_Cultur.... It was not the literal first usage, but the word was definitely not widely known before the 60s:
https://books.google.com/ngrams/graph?content=counterculture.... But I said literally and it wasn't literally true, so my bad.