Road transport of goods accounts for a majority of wear on the roads. Rail is naturally more cumbersome because railroads are less ubiquitous than roads, but it is much more efficient in terms of both energy usage and labor.
If we subsidize road transport by letting tax payers or commuters pay for their road wear and tear, we end up with more road transport at the cost of more labor and more energy use. That's deadweight loss caused by the government distorting the market with road subsidies.
Road transport should be used where its flexibility gives it a competitive advantage, not be the default because taxpayers subsidize it.
One way to compensate lower-income earners for higher food prices is to lower taxes for those with low incomes, making the tax rate more progressive. Another is to reduce VAT for basic needs products like food.