This isn't universally true - some meat is grown by grazing "free" plant calories. But it is true for grain fed cattle -- for most US industrial meat production.
The methane production issue is in addition to the plant/meat production inefficiencies.
Why is this a problem? Animals also produce higher quality protein with higher bioavailability, have a better amino acid profile that better suits what humans require, and provide nutrients that people cannot get from plants.
That's on top of the fact that a lot of those plant calories aren't even consumable by humans.
In other words, fertilising the soil with fossil fuel derived products is just.. more profitable.
The solution is probably carbon pricing of some kind for fertilisers: the cost of organic farming needs to be roughly the same. Agricultural subsidies are already enormous, so some of them could be directed to food prices directly, to ease the transition for consumers.
The fertilizer contributes nitrogen and other minerals. Eliminating agricultural emissions should involve non fuel nitrogen fixation, not methane reduction.