It’s not a universal problem. A lot of modern languages allow multiple versions of a library to be pulled in to the same code base, through different dependency paths. (Eg nodejs, rust). It’s not a perfect answer by any means, but it’s nice not needing to worry about some package pulling in an inconvenient version of one of its dependencies.

Also, just to name it, it’s ridiculous that a specific graphics card manages to restrict the version of gproto that you’re using. You don’t have this problem with nvidia drivers, since cuda stuff is much less fiddly. AMD needs to pull a finger out and fix the bugs in their stack that make it so fragile like this.