Q2: A trapezoid is left at the bottom if you just stack triangles, yes. Other approaches will probably result in one or more gaps of a different shape.
Q3: There's an infinite number of ways you can arrange the small triangles, so an exhaustive search isn't going to help you. The interesting part is that there is a proof of n^2+1 being possible for all non-equilateral triangles, so there is definitely a possibility of it also being possible for equilateral triangles.
As you already noticed, there might be approaches beyond stacking. Look up "square packing in a square"[0] for fun, you get some really ugly-looking non-obvious results out of that.
Don't worry about it, I know just enough to understand the problem - half of the linked PDF is also beyond me.
[0]: https://en.wikipedia.org/wiki/Square_packing#Square_packing_...