F# being on top of the CLR and .NET is a benefit. It is very easy to install .NET, and it comes with a huge amount of functionality.
If you're asking if the language F# could be ported to another VM, then I'd say yes, but I don't see the point unless that VM offered similar and additional functionality.
You can use F# as if C# didn't exist, if that's what you mean, and by treating .NET and CLR as an implementation detail, which they effectively are.
Other than that, the question is indeed strange and I agree with your statements.
But these days .NET is a great server-side option. One of the fastest around, with a bit of tuning.