It's a 'misunderstanding' of how reddit works. It turns out that you can't delete comments from subreddits that are private without the required posting permission flag.
So when subreddits went 'dark' during the protest, and then people deleted their comment history, the messages on the dark subreddits came back when the protest ended and the subreddit became public again. At that point you can just delete the comments again of course, unless you deleted your account, in which case those necromanced comments stay undead forever.