I believe they’re on-die capacitors for the charge pumps these days. The external ones are just for smoothening.
Probably a method to retrofit write/erase protection would be to just do power analysis and cap the current the flash chip can receive. Or shut it down if that works for you.
Not sure if they’re intelligent enough to run their charge pumps slower under compromised electrical conditions. Or if they’ll go haywire if they can’t do idle-time wear levelling/block erases.