From an academic perspective, its "terrible", so much duplicate layers out in the world, from a practical perspective of delivering a product, it makes a lot of sense.
It's also simpler from the fact that I was trying to make it work for both what I call "persistent" containers (ala pets in the terminology) that could be upgraded in place and "ephemeral" containers (ala cattle) when in practice the work to enable upgrading in place (replacing layers on demand) to upgrade "persistent" containers I'm not sure is that useful (its technologically interesting, but that's different than useful).
My argument for this was that this actually improves runtime upgrading of systems. With dpkg/rpm, if you upgrade libc, your systems is actually temporarily in a state where it can't run any applications (in the delta of time when the old libc .so is deleted and the new one is created in its place, or completely overwrites it), any program that attempts to run in that (very) short period time, will fail (due to libc not really existing). By having a mechanism where layers could be swapped in essentially an atomic manner, no delete / overwrite of files occurs and therefore there is zero time when programs won't run.
In practice, the fact that a real world product came out with a very similar design/implementation makes me feel validated (i.e. a lot of phd work is one offs, never to see the light of day after the papers for it are published).