If I had to guess - The patent rights clause weirds out a lot of lawyers. Obviously anyone who works with hardware doesn't like the anti-tivoization clause. Another possibility is the AGPL (which IS lethal for obvious reasons) is often conflated with GPLv3.
All I know is GPLv2 is fine, GPLv3 is usually not, and AGPL is never possible in corporations that I've worked for.