You just need a middleman that aggregates micropayments into large enough amounts to work with non-micropayment systems.
Some might object to having to get middlemen involved, but the thing is that even with cryptocurrency payments you are going to need middlemen because the web is international.
If your website is directly charging crawlers to crawl and you get crawled and paid by any crawler from another country, congratulations! You are now engaged directly in international trade and have a whole slew of regulations to deal with, probably from both your country and the country the crawler is from.
If you go through a middleman you can structure things so it is the middleman that is buying crawler access from you. Pick a middleman in your country (or anywhere in the EU of you are in the EU) and most of your regulatory headaches go away.