If the software base is full of gotchas and unintended side-effects then the source of the problem is in unclean separation of concerns and tight coupling. Of course, at some point refactoring just becomes an almost insurmountable task, and if the culture of the company does not change more crap will be added before even one of your refactorings land.
Believe me, it's possible to solve complex problems by clean separation of concerns and composability of simple components. It's very hard to do well, though, so lots of programmers don't even try. That's where you need strict ownership of seniors (who must also subscribe to this point of view).