This is a category error. The 2FA seed token may be a string of bytes just like the password, but the seed is never communicated outside your device. That makes them different types of secrets: a capture of the transmitted login codes will not compromise the 2FA seed. Even if you auto-generate the password in the same way, it's the actual valuable secret that needs to leave your device -- by design.
I don't know if a website database breach compromises both keys. Is the 2FA seed a pre-shared key, or is the algorithm asymmetric? I seriously hope it's the latter, but I don't know for sure.