The thing to remember is the output impedance. You can have 1000's of volts at a node, but its sourced by a VERY high impedance output. so when you touch it with your hands (which is like 100kohm on a dry day), the voltage collapses because of the voltage divider your hand created.
But if the output impedance is low (transmission lines), well its game over.
https://www.youtube.com/watch?v=BGD-oSwJv3E
But even beyond that, the maximum power output will still be pretty limited. If you short the HV rails, it will almost certainly start to drop in voltage and raise in current quickly, but only to the limits of the resistance from other elements in series and the power source's output ability. I strongly doubt you could even make something dangerous from the Flipper, at least unless you attach a large cap, let it charge slowly, and attach a taser module.
I would be rather surprised if a device that is powered off a lithium ion battery like the one in the Flipper Zero managed to seriously injure someone.