> I've installed emacs now on
I never had what you describe. The variability there could be almost random - which version of Emacs you're installing? How are you installing it? Are you trying to build it from source? What renderer are you using - there are several: Lucid, Motif, GTK, NS, W32, Haiku, Android, Cairo, Pgtk. Perhaps it's installing different renderer instead of using pgtk. Maybe it's not a bug with Emacs but with the package that bundles it for your distro?
> how it's not an Emacs issue if it only happens with emacs?
It does seem to be an Emacs issue. But it is a specific issue that happens on the combination of your hardware and your OS configuration.