Everything has a cost. For the web, that's typically monetary or your data and attention to advertisers. I think you're right that the cost of Hacker News is that my participation is lending some (tiny incremental) legitimacy to Y Combinator. It's also costing some tiny amount of my attention, in the sense that I may not have heard of Y Combinator if it weren't for Hacker News. For me personally, that is absolutely fine – but I'm glad you made it explicit so that it's a conscious choice.
[Edit: Of course it costs an absolutely vast amount of my attention :-) but I mean only a teeny tiny fraction of that is "payment" in the sense of noticing that Y Combinator exists.]