The problem is that these properties get in the way of proving arithmetic theorems because if you are being absolutely strict, you have to distinguish things that are true of natural numbers as an algebraic structure, from things that just happen to be the case because you picked some specific representation to use for natural numbers. This introduces a lot of noise and makes formal proofs very frustrating, somewhat like when you're programming and you have to bend the type system of your compiler to accept your code even though the program is conceptually correct and you end up spending effort on type coercions, casts, "unsafe" blocks etc... mathematically this makes your proof significantly longer, more brittle, and harder to reuse because it accidentally depends on details of the chosen encoding rather than on the intrinsic properties of arithmetic.
