I didn't read the article, but it's likely they are faster than light is when traveling through that water. light can have different speeds through different media.
for charged particles (so not for neutrinos) this leads the Cherenkov radiation, often observed in the cores of nuclear reactor: https://en.wikipedia.org/wiki/Cherenkov_radiation
as to why in this case: it can be somewhat intuitive to think that photons would be forced to take a somewhat longer path when traveling through a medium they interact with a lot (water, anything with a charge) then something which is almost going at the speed of light and famously doesn't interact with almost anything!