We can't change history, but that doesn't mean we can't look to history to understand how the present got to be the way it is. Moreover, just because history has happened and we can't change it doesn't mean it doesn't have ongoing repercussions.
> But the problem is not that they were disadvantaged, but that they stay disadvantaged, much of it through somewhat self-sustaining social processes.
The problem is that they were enslaved, and then actively repressed. Those are facts that have repercussions in the present. Anecdote: my grandfather was trained as both a doctor and a lawyer, and was a wealthy man. My family didn't inherit any money, but my mom inherited an education from a private tutor and I grew up hearing about him and being shaped by those stories. Well the grandfathers of black people alive today were systematically repressed, denied education and denied economic advancement. What kind of stories do black kids grow up hearing, and how do those stories shape them in the present? The problem goes far beyond economic disadvantage. It's one thing to prevent a group of people from accumulating capital. It's another to destroy their social structures, actively prevent them from bettering themselves, and use the authority of the state to segregate them from the majority population. That results in cultural devastation that goes far deeper than simple economic loss.
> The three strikes law hurts these communities the most not because they are black, but because the economic situation is such that people are compelled to steal or commit other crimes.
Crime isn't a simple function of economic status. There is a wide variety of crime rates within communities of identical economic status. Crime is a function of social cohesion, the vitality of social structures, community respect for authority, trust, etc. Those things are deeply tied up in race as a result of the legacy of segregation. You don't think there is a difference between a poor black community and a poor white community when it comes to respect for authority? When that authority was, until just a few decades ago, fighting tooth and nail to maintain segregation and repression?