Is that the point? "In the past" there was a massive plan to build BART lines to all over the Bay Area[0] that never came to fruition. There isn't even serious talk about doing this. Modern companies, which didn't exist, are having to deal with the short-sightedness of times past (however, this is a regular lament of the young). It's not that these companies don't necessarily not want to provide for the public good (I don't know if they do or not, it's inconsequential), it's that the public didn't want them to. Even if there were plans, by the companies, to contribute to "solving" transit issues, it's easy to have it tied up in frustrating planning stages, a la Geary Bus Rapid Transit[1].
Meanwhile, people have to get to work.
What we're seeing is the result of a number of strong, independent, competing systems (transit, property rights, rent control, NIMBY, etc), working in isolation, resulting in a massive, fustercluck that doesn't have a solid solution that does anything other than continue to perpetuate it's own bureaucracy.
And again, saying that the companies are not doing anything to "solve" the transit problems ignores the fact that busing employees, in fact, are part of "solving" transit problems, specifically those of highway traffic (and second order impacts like greenhouse gas emissions and roadwear).
[0] this makes the internet rounds with Bay Area people every few months, https://www.google.com/search?q=bart+map+1950s
[1] http://sf.streetsblog.org/2013/02/06/geary-brt-advisor-resig...