Its about footprint. We certainly will run Linux on the Mill, but its work we don't have to put on the critical path. L4 is just a familiar lightweight OS, and we're keen to play with Mill-specific security features which are particularly applicable to microkernels too.
When we do port Linux, I expect it to become much more microkernel like, as in why would you want your disk drivers to be able to read write video memory etc?