In this case, the metaphor would be more accurate the other way around. If the industry were full of smokers, would it make sense for them to accommodate people who don't smoke? We definitely should, and we do, because secondhand smoke is damaging.
The person in the minority is the one that was being hurt. Restraining yourself from telling silly jokes won't hurt anyone; feeling threatened in an unsafe environment does, and this is how it is perceived an industry where women are in the minority. "Grow a thicker skin" is a legitimate reply up to the point where you accept them to tell you: "Right, but tone down your behavior". You can't expect the other party to be the only one to agree with everything you do, if you are not willing to concede something as well in return.
You can and should be able to set up as many private venues where you can behave in as rude ways as you want, as long as all people participating in them have accepted those norms. But at public places, open for all, it's good to know that there are expectations of polite behavior, and people should respect those limits.
> The joke wasn't directed at her. Her response was directed at him.
Quite right. That's why her behavior is not acceptable either, because the expected conduct between adults is to handle personal grievances in private. But the way she handled the situation doesn't make her concerns invalid, and we should not conflate the first with the second.