Markdown's syntax constrains how much it can ever do, whereas AsciiDoc is designed to be extensible, providing macros at the "language" level and underneath that there's the whole DocBook toolchain: it seems to me that the clever move is leverage all this, rather than create yet-another-Markdown (and it's not like the syntax tradeoff is at all dramatic.) I think the footnote issue you mention can be done in block macros, but I'm not sure.
I might be getting a bit utopian here, but what would be really great is if all these markup languages sought to have their canonical implementation in pandoc, which would allow for the standardisation of a set of pass-throughs/filters/annotations for things like equations and citations.
Thanks for pandoc, btw. Just out of interest, is there a reason you haven't attempted an AsciiDoc reader? (Or have you?) Assuming it'd be quite a bit more work than the others, what with macros and so forth.