Wikipedia says ( http://en.wikipedia.org/wiki/RSA_(cryptosystem) ): "When m is not relatively prime to n, the argument just given is invalid. This is highly improbable (only a proportion of 1/p + 1/q − 1/(pq) numbers have this property), but even in this case the desired congruence is still true. Either m ≡ 0 (mod p) or m ≡ 0 (mod q), and these cases can be treated using the previous proof.".
I'm not sure I follow 100% - perhaps someone smarter can explain.